FPGA Implementation of the FM-Index String Matching algorithm

Author:   Edward Bryann Fernandez
Publisher:   Scholars' Press
ISBN:  

9783639702781


Pages:   140
Publication Date:   16 November 2013
Format:   Paperback
Availability:   In stock   Availability explained
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FPGA Implementation of the FM-Index String Matching algorithm


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Overview

This book discusses the research processes of developing a hardware implementation of a string matching algorithm. The first phase of the research is qualifying the appropriate algorithm for the application of DNA sequence matching. The second phase is re-inventing the algorithm to make it suitable for a hardware implementation. The third phase is implementing the chosen algorithm using FPGAs. The last phase is measuring performance using real data sets for comparison to other known tools. Our implementation shows a real time speedup up of up to 70x against BOWTIE, a known tool used in sequence matching.

Full Product Details

Author:   Edward Bryann Fernandez
Publisher:   Scholars' Press
Imprint:   Scholars' Press
Dimensions:   Width: 15.20cm , Height: 0.80cm , Length: 22.90cm
Weight:   0.213kg
ISBN:  

9783639702781


ISBN 10:   3639702786
Pages:   140
Publication Date:   16 November 2013
Audience:   General/trade ,  General
Format:   Paperback
Publisher's Status:   Active
Availability:   In stock   Availability explained
We have confirmation that this item is in stock with the supplier. It will be ordered in for you and dispatched immediately.

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