Overview

This volume explores databases containing genome-based data and genome-wide analyses. This book covers databases from all eukaryotic taxa, except plants. The chapters describe database contents and classic use-cases, which assist in accessing eukaryotic genomic data and encouraging comparative genomic research. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and authoritative, Eukaryotic Genomic Databases: Methods and Protocols is a valuable resource for geneticists and molecular biologists who are interested in the latest eukaryotic genomics data. The chapters 'PomBase: The Scientific Resource for Fission Yeast' and 'The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data' are available open access under a CC BY 4.0 license via link.springer.com.

Full Product Details

Author:   Martin Kollmar
Publisher:   Humana Press Inc.
Imprint:   Humana Press Inc.
Edition:   1st ed. 2018
Volume:   1757
Weight:   1.325kg
ISBN:  

9781493977369

ISBN 10:   1493977369
Pages:   581
Publication Date:   15 May 2018
Audience:   Professional and scholarly ,  College/higher education ,  Professional & Vocational ,  Postgraduate, Research & Scholarly
Format:   Hardback
Publisher's Status:   Active
Availability:   Manufactured on demand  
We will order this item for you from a manufactured on demand supplier.

Table of Contents

Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk.- An Introduction to the Saccharomyces Genome Database (SGD).- Using the Candida Genome Database.- PomBase: The Scientific Resource for Fission Yeast.- EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.- The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data.- Mouse Genome Informatics (MGI) is the International Resource for Information on the Laboratory Mouse.- A Primer for the Rat Genome Database (RGD).- Bovine Genome Database: Tools for Mining the Bos taurus Genome.- Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.- Using ZFIN: Data Types, Organization and Retrieval.- EchinoBase: Tools for Echinoderm Genome Analyses.- A Multi-Omics Database for Parasitic Nematodes and Trematodes.- Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes.- UsingWormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data.- Using FlyBase to Find Functionally Related Drosophila Genes.- Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects.- Navigating the i5k Workspace@NAL:  A Resource for Arthropod Genomes.

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