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Author:   Massimiliano Bonomi ,  Carlo Camilloni
Publisher:   Humana Press Inc.
Imprint:   Humana Press Inc.
Edition:   1st ed. 2019
Volume:   2022
Weight:   1.318kg
ISBN:  

9781493996070

ISBN 10:   149399607
Pages:   581
Publication Date:   08 August 2019
Audience:   Professional and scholarly ,  Professional & Vocational
Format:   Hardback
Publisher's Status:   Active
Availability:   Manufactured on demand  
We will order this item for you from a manufactured on demand supplier.

Table of Contents

Atomistic Force Fields for Proteins.- Force Fields for Small Molecules.- Improvement of RNA Simulations with Torsional Revisions of the AMBER Force Field.- Quantum Chemical and QM/MM Models in Biochemistry.- A Practical View of the Martini Force Field.- Using SMOG 2 to Simulate Complex Biomolecular Assemblies.- Replica Exchange Methods for Biomolecular Simulations.- Metadynamics to Enhance Sampling in Biomolecular Simulations.- Protein-Ligand Binding Free Energy Calculations with FEP+.- Ligand Binging Calculations with Metadynamics.- The Adaptive Path Collective Variable - A Versatile Biasing Approach to compute the Average Transition Path and Free Energy of Molecular Transitions.- Google-Accelerated Biomolecular Simulations.- A Practical Guide to the Simultaneous Determination of Protein Structure and Dynamics using Metainference.- Inferring Structural Ensembles of Flexible and Dynamic Macromolecules using Bayesian,Maximum Entropy, and Minimal-Ensemble Refinement Methods.- Modeling Biological Complexes using Integrative Modeling Platform.- Co-Evolutionary Analysis of Protein Sequences for Molecular Modeling.- Coarse Graining of a Giant Molecular System: The Chromatin Fiber.- Analyzing Biomolecular Ensembles.- Using Data-Reduction Techniques to Analyze Biomolecular Trajectories.- Analysis Libraries for Molecular Trajectories: A Cross-Language Synopsis.- Analyzing and Biasing Simulations with PLUMED.

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